Publications

ZORA Publication List

Publications

• 2026

  • Journal Article

    • He, J., Papa, G., Azizi, F., Kirsche, L., Artola-Boran, M., Ferreira Cassio, R., Hotz, A. L., Geiger, G., Francas, B., Weber, A., Tzankov, A., Kontarakis, Z., Leary, P., & Müller, A. (2026). Gastric Organoid-Based Ectopic and Orthotopic In Vivo CRISPR Screening for Tumor Suppressors in Gastric Cancer Gastroenterology, 170, 495–510. https://doi.org/10.1053/j.gastro.2025.09.009
    • Kirsche, L., Leary, P., Blaser, M. J., Scharl, M., Negussie, A., & Müller, A. (2026). Gut microbial signatures expose the westernized lifestyle of urban Ethiopian children Communications Biology, 9, 346. https://doi.org/10.1038/s42003-026-09639-2

• 2025

  • Journal Article

    • Kirsche, L., He, J., Müller, A., & Leary, P. (2025). MARMOT: A multifaceted R pipeline for analysing spectral flow cytometry data from subcutaneously growing murine gastric organoids Journal of Immunological Methods, 540, 113854. https://doi.org/10.1016/j.jim.2025.113854
    • Cui, N., Leary, P., Ivanova, V.-S., Stirm, K., Kirsche, L., Aceto, N., Stenner, F., Dieterich, L., Detmar, M., Petrova, E., Mundt, S., Greter, M., Tzankov, A., & Müller, A. (2025). PDL1-expressing macrophages infiltrate diffuse large B-cell lymphoma and promote lymphoma growth in a MYC-driven experimental model Blood Cancer Journal, 15, 66. https://doi.org/10.1038/s41408-025-01281-1
    • Dietsche, L., Stirm, K., Lysenko, V., Schneidawind, C., Tzankov, A., Müller, A., & Theocharides, A. P. A. (2025). Loss of SMAD1 in acute myeloid leukemia with KMT2A::AFF1 and KMT2A::MLLT3 fusion genes Frontiers in Oncology, 14, 1481713. https://doi.org/10.3389/fonc.2024.1481713
    • Artola-Borán, M., Kirsche, L., Fallegger, A., Leary, P., Tanriover, M., Goodwin, T., Geiger, G., Hapfelmeier, S., Yousefi, S., Simon, H.-U., Arnold, I. C., & Müller, A. (2025). IgA facilitates the persistence of the mucosal pathogen Helicobacter pylori Mucosal Immunology, 18, 232–247. https://doi.org/10.1016/j.mucimm.2024.11.006
    • Ivanova, V.-S., Menter, T., Cui, N., Leary, P., Zinner, C., Halter, J. P., Stenner, F., Dirnhofer, S., Müller, A., & Tzankov, A. (2025). Distinct subtypes of post-transplant lymphoproliferative disorders: CHIP-like mutations in early lesions and substantial mutational differences between EBV-positive and EBV-negative diffuse large B-cell lymphomas British Journal of Haematology, 206, 484–504. https://doi.org/10.1111/bjh.19952

• 2024

  • Journal Article

    • Rao, S., Andrs, M., Shukla, K., Isik, E., König, C., Schneider, S., Bauer, M., Rosano, V., Prokes, J., Müller, A., & Janscak, P. (2024). Senataxin RNA/DNA helicase promotes replication restart at co-transcriptional R-loops to prevent MUS81-dependent fork degradation Nucleic Acids Research, 52, 10355–10369. https://doi.org/10.1093/nar/gkae673
    • Nascakova, Z., He, J., Papa, G., Francas, B., Azizi, F., & Müller, A. (2024). Helicobacter pylori induces the expression of Lgr5 and stem cell properties in gastric target cells Life Science Alliance, 7, e202402783. https://doi.org/10.26508/lsa.202402783
    • Ivanova, V.-S., Davies, J., Menter, T., Wild, D., Müller, A., Krasniqi, F., Stenner, F., Papachristofilou, A., Dirnhofer, S., & Tzankov, A. (2024). Primary bone diffuse large B-cell lymphoma (PB-DLBCL): a distinct extranodal lymphoma of germinal centre origin, with a common EZB-like mutational profile and good prognosis Histopathology, 84, 525–538. https://doi.org/10.1111/his.15096

  • Dissertation

    • Schwestermann, J. (2024). Role of the Tumor Microenvironment in the Context of Proteasome Inhibitor Resistance in Multiple Myeloma (Dissertation, University of Zurich) https://doi.org/10.5167/uzh-262014

• 2023

  • Journal Article

    • He, J., Nascakova, Z., Leary, P., Papa, G., Valenta, T., Basler, K., & Müller, A. (2023). Inactivation of the tumor suppressor gene Apc synergizes with H. pylori to induce DNA damage in murine gastric stem and progenitor cells Science Advances, 9, eadh0322. https://doi.org/10.1126/sciadv.adh0322
    • Müller, A., & He, J. (2023). A Double Whammy on Gastric Cancer Risk New England Journal of Medicine, 388, 1225–1229. https://doi.org/10.1056/NEJMe2215503
    • Stirm, K., Leary, P., Wüst, D., Stark, D., Joller, N., Karakus, U., Boyman, O., Tzankov, A., & Müller, A. (2023). Treg-selective IL-2 starvation synergizes with CD40 activation to sustain durable responses in lymphoma models Journal for ImmunoTherapy of Cancer, 11, e006263. https://doi.org/10.1136/jitc-2022-006263
    • Reuter, S., Raspe, J., Uebner, H., Contoyannis, A., Pastille, E., Westendorf, A. M., Caso, G. C., Cover, T. L., Müller, A., & Taube, C. (2023). Treatment with Helicobacter pylori-derived VacA attenuates allergic airway disease Frontiers in Immunology, 14, 1092801. https://doi.org/10.3389/fimmu.2023.1092801

• 2022

  • Journal Article

    • Borbet, T. C., Pawline, M. B., Zhang, X., Wipperman, M. F., Reuter, S., Maher, T., Li, J., Iizumi, T., Gao, Z., Daniele, M., Taube, C., Koralov, S. B., Müller, A., & Blaser, M. J. (2022). Influence of the early-life gut microbiota on the immune responses to an inhaled allergen Mucosal Immunology, 15, 1000–1011. https://doi.org/10.1038/s41385-022-00544-5
    • Bertram, K., Leary, P. J., Boudesco, C., Fullin, J., Stirm, K., Dalal, V., Zenz, T., Tzankov, A., & Müller, A. (2022). Inhibitors of Bcl-2 and Bruton’s tyrosine kinase synergize to abrogate diffuse large B-cell lymphoma growth in vitro and in orthotopic xenotransplantation models. Leukemia, 36, 1035–1047. https://doi.org/10.1038/s41375-021-01470-4
    • Artola-Borán, M., Fallegger, A., Priola, M., Jeske, R., Waterboer, T., Dohlman, A. B., Shen, X., Wild, S., He, J., Levesque, M. P., Yousefi, S., Simon, H.-U., Cheng, P. F., & Müller, A. (2022). Mycobacterial infection aggravates Helicobacter pylori-induced gastric preneoplastic pathology by redirection of de novo induced Treg cells Cell Reports, 38, 110359. https://doi.org/10.1016/j.celrep.2022.110359
    • Fallegger, A., Priola, M., Artola-Borán, M., Núñez, N. G., Wild, S., Gurtner, A., Becher, B., Yousefi, S., Simon, H.-U., Arnold, I. C., & Müller, A. (2022). TGF-β production by eosinophils drives the expansion of peripherally induced neuropilin - RORγt + regulatory T-cells during bacterial and allergen challenge Mucosal Immunology, 15, 504–514. https://doi.org/10.1038/s41385-022-00484-0

  • Dissertation

    • Grünbach, M. (2022). Exploiting the innate immune system for curing HIV-1 (Dissertation, University of Zurich)

Pagination